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    胡杨异形叶差异表达miRNA及其靶基因功能分析

    Differential expression of miRNA and function of target genes in heteromorphic leaves of Populus euphratica

    • 摘要:
      目的异形叶性是植物为适应环境在同一植株上产生多种形态成熟叶片的现象。胡杨是典型的木本异形叶植物,前人研究发现,胡杨异形叶片间展现出不同的生理特性及环境适应性。本研究拟通过对胡杨异形叶差异表达miRNA及其靶基因功能的分析,揭示胡杨叶片形态及其生理变化的分子调控机制。
      方法以成年胡杨披针形叶和锯齿卵圆形叶为实验材料,通过高通量测序对其miRNA的表达模式及差异表达miRNA的靶基因功能进行比较研究。
      结果共获得6个高质量的sRNA文库,各文库有效序列占原始序列的56% ~ 81%。通过比对,共鉴定517个已知miRNA和127个新预测miRNA,主要长度分布区间为20 ~ 22 nt,其中的389个miRNA匹配至54个已知的miRNA家族。两种形态叶片共同检出的miRNA有369个,与披针形叶片相比,锯齿卵圆形叶中7个miRNA上调表达,15个下调表达。通过靶基因预测及功能分析,发现差异表达miRNA参与调控胡杨异形叶的抗逆相关途径,如对盐胁迫的响应,磷酸肌醇代谢,角质、软木脂和蜡的生物合成,碱基切除修复和RNA降解等代谢途径。利用实时荧光定量PCR验证了5个差异表达miRNA的表达趋势与高通量测序结果一致,通过PCR检测发现差异表达miRNA与其靶基因存在一定的负调控关系。
      结论胡杨异形叶中miRNA表达模式存在差异。其中,调控植物生长发育的保守的miR167、miR166及调控植物抗逆性的miR172在锯齿卵圆形叶中表达量上调,参与植物逆境响应的保守的miR169、miR396在锯齿卵圆形叶中下调表达,推测差异表达miRNA引起了异形叶间形态的差异,同时使锯齿卵圆形叶对不利环境具有较强的耐受性。这与我们前期有关胡杨异形叶形态与生理特性的研究结果相一致。

       

      Abstract:
      ObjectiveHeterophylly is the phenomenon that plants form multiple types of mature leaves on the same plant to adapt to the environment. Populus euphratica is a typical woody heterophyllous plant, and previous research found that there were differences between heteromorphic leaves of P. euphratica in physiological characteristics and enironmental adaption. In this study, to reveal the molecular regulation of morphological and physiological characteristics in heteromorphic leaves of P. euphratica, we analyzed the differential expression of miRNAs and functions of target genes in heteromorphic leaves of P. euphratica.
      MethodIn this paper, using high-throughput sequencing, comparative study for miRNA expression patterns and functions of target genes was conducted in lanceolate leaves and dentate broad-ovate leaves.
      ResultTotal of 6 high-quality sRNA libraries were obtained, and the valid sequence of each library accounted for 56%−81% of the raw data. Total 517 known miRNAs and 127 predicted novel miRNAs were identified, the length of which was mainly distributed in 20−22 nt. Besides, 389 of the identified miRNAs were mapped to 54 known miRNA families, and there were 369 miRNAs detected in both two types of leaves. Compared with lanceolate leaves, 7 miRNAs were up-regulated and in dentate broad-ovate leaves, while 15 miRNAs were down-regulated. Based on the prediction of target genes and function annotation, differentially expressed miRNAs were involved in stress-resistant pathways in Populus euphratica, such as cellular response to salt stress, inositol phosphate metabolism, cutin, suberine and wax biosynthesis, base excision repair, and RNA degradation pathways. Moreover, expression levels of 5 differentially expressed miRNAs and their corresponding target genes were examined by quantitative real-time PCR, which could confirm the expression profile of the sRNA-sequencing and the negative regulation of miRNAs on their target genes.
      ConclusionOur study reveales that the expression patterns of miRNA between the heteromorphic leaves of P. euphratica are different. The miR167 and miR166 involved in growth and development of plant and miR172 associated with stress resistance of plant are up-regulated in dentate broad-ovate leaves. Besides, the miR169 and miR396 involved in stress resistance of plant are down-regulated in dentate broad-ovate leaves in comparison to lanceolate leaves. We speculate that the differential expression of miRNA may induce the morphological difference between heteromorphic leaves, and could increase the resistance of dentate broad-ovate leaves to adverse environments, this is consistent with our previous results of morphological and physiological characteristics in heteromorphic leaves of P. euphratica.

       

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