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    张志翔, 林善枝, 薛娴. 利用ITS序列探讨谷精草属5个种的系统发育[J]. 北京林业大学学报, 2007, 29(5): 1-6. DOI: 10.13332/j.1000-1522.2007.05.001
    引用本文: 张志翔, 林善枝, 薛娴. 利用ITS序列探讨谷精草属5个种的系统发育[J]. 北京林业大学学报, 2007, 29(5): 1-6. DOI: 10.13332/j.1000-1522.2007.05.001
    ZHANG Zhi-xiang, LIN Shan-zhi, XUE Xian. Phylogenetical relationship of five Ericaulon species based on the ITS sequences[J]. Journal of Beijing Forestry University, 2007, 29(5): 1-6. DOI: 10.13332/j.1000-1522.2007.05.001
    Citation: ZHANG Zhi-xiang, LIN Shan-zhi, XUE Xian. Phylogenetical relationship of five Ericaulon species based on the ITS sequences[J]. Journal of Beijing Forestry University, 2007, 29(5): 1-6. DOI: 10.13332/j.1000-1522.2007.05.001

    利用ITS序列探讨谷精草属5个种的系统发育

    Phylogenetical relationship of five Ericaulon species based on the ITS sequences

    • 摘要: 以谷精草属(Eriocaulon)的尼泊尔谷精草(Eriocaulon nepalense)、白药谷精草(E.cinereum)、高山谷精草(E.alperstre)、华南谷精草(E.sexangulare)、南亚谷精草(E.oryzetorum)等5个种为研究对象,通过PCR扩增技术获得了谷精草属5个种的内转录间隔区序列,并对ITS序列进行分析.结果发现,供试谷精草属植物的ITS区长度并不完全一致,其ITS1的长度范围为171~306 bp,G+C含量为38.24%~55.04%;ITS2的长度范围为184~288 bp,G+C含量为36.46%~57.02%.在此基础上,采用Clustal W version 1.7对所得的ITS序列进行排序与分析,以灯心草属(Juncus)的一个种J.dregeanus为外类群,并使用PAUP 4.0 10 b软件采用最大简约法分析获得最简约的系统发育树.结果表明,在检测的ITS序列的738个位点中稳定位点174个、变异位点564个(包括276个信息位点).另外,从发育树上平行分出两个大的总分支,其中E.nepalense、E.oryzetorum、E.alpestreE.cinereum(云南宣威)为一支;E.sexangulare为一支.上述二个分支与外类群聚在一起,bootstrap值为100%.

       

      Abstract: The obtained ITS(internal transcribed spacer) sequences of five species (Eriocaulon nepalense,E.cinereum,E.alperstre,E.sexangulare and E.oryzetorum) in Eriocaulon by PCR technique were analyzed by PAUP 4.0 10 b software,and the strict consensus tree was constructed using Juncus dregeanus as outgroup in this study.The results showed that the ranges of ITS1 and ITS2 size of the tested five species were 171-306 bp and 184-288 bp,respectively,and the ranges of G+C content of ITS1 and ITS2 were about 38.24%-55.04% and 36.46%-57.02%,respectively,indicating that the ITS sequences of Eriocaulon plants were not completely identical.It was found that there were 174 constant characters and 564 varied characters (including 276 information characters) in the total 738 characters of the tested ITS sequences by the Clustal X(1.81) multiple sequence alignment.In addition,there were two branches in the constructed phylogenetical tree,in which E.nepalense,E.oryzetorum,E.alpestre and E.cinereum were grouped as one branch,while E.sexangulare presented an independent branch,and the above two branches mentioned with outgroup Juncus dregeanus were finally grouped with 100% of bootstrap.The obtained results provide an important basis for the further study on the confirmation of phylogenetic position of Eriocaulaceae and Eriocaulon.

       

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